Ticket #38724: py32-scipy-main.log

File py32-scipy-main.log, 14.8 KB (added by watsodw, 12 years ago)
Line 
1version:1
2:msg:main --->  Computing dependencies for py32-scipy:info:main .:debug:main py32-scipy has no conflicts
3:debug:main Searching for dependency: python32
4:debug:main Found Dependency: receipt exists for python32
5:debug:main Searching for dependency: py32-numpy
6:debug:main Found Dependency: receipt exists for py32-numpy
7:debug:main Searching for dependency: py32-nose
8:debug:main Found Dependency: receipt exists for py32-nose
9:debug:main Searching for dependency: SuiteSparse
10:debug:main Found Dependency: receipt exists for SuiteSparse
11:debug:main Searching for dependency: swig-python
12:debug:main Found Dependency: receipt exists for swig-python
13:debug:main Searching for dependency: atlas
14:debug:main Found Dependency: receipt exists for atlas
15:debug:main Searching for dependency: gcc44
16:debug:main Found Dependency: receipt exists for gcc44
17:msg:main
18:debug:main Executing org.macports.main (py32-scipy)
19:debug:main changing euid/egid - current euid: 0 - current egid: 0
20:debug:main egid changed to: 504
21:debug:main euid changed to: 63920313
22:debug:archivefetch archivefetch phase started at Mon Apr  8 15:20:17 CDT 2013
23:debug:archivefetch Executing org.macports.archivefetch (py32-scipy)
24:debug:archivefetch Privilege de-escalation not attempted as not running as root.
25:debug:fetch fetch phase started at Mon Apr  8 15:20:17 CDT 2013
26:notice:fetch --->  Fetching distfiles for py32-scipy
27:debug:fetch Executing org.macports.fetch (py32-scipy)
28:debug:fetch Privilege de-escalation not attempted as not running as root.
29:debug:checksum checksum phase started at Mon Apr  8 15:20:17 CDT 2013
30:notice:checksum --->  Verifying checksum(s) for py32-scipy
31:debug:checksum Executing org.macports.checksum (py32-scipy)
32:info:checksum --->  Checksumming scipy-0.12.0.tar.gz
33:debug:checksum Correct (rmd160) checksum for scipy-0.12.0.tar.gz
34:debug:checksum Correct (sha256) checksum for scipy-0.12.0.tar.gz
35:debug:checksum Privilege de-escalation not attempted as not running as root.
36:debug:extract extract phase started at Mon Apr  8 15:20:18 CDT 2013
37:notice:extract --->  Extracting py32-scipy
38:debug:extract Executing org.macports.extract (py32-scipy)
39:info:extract --->  Extracting scipy-0.12.0.tar.gz
40:debug:extract setting option extract.args to '/opt/macports/var/macports/distfiles/py-scipy/scipy-0.12.0.tar.gz'
41:debug:extract Environment: CPATH='/opt/macports/include' CC_PRINT_OPTIONS_FILE='/opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/macports/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.6'
42:debug:extract Assembled command: 'cd "/opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work" && /usr/bin/gzip -dc '/opt/macports/var/macports/distfiles/py-scipy/scipy-0.12.0.tar.gz' | /usr/bin/gnutar --no-same-owner -xf -'
43:debug:extract Executing command line:  cd "/opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work" && /usr/bin/gzip -dc '/opt/macports/var/macports/distfiles/py-scipy/scipy-0.12.0.tar.gz' | /usr/bin/gnutar --no-same-owner -xf -
44:debug:extract euid/egid changed to: 0/0
45:debug:extract chowned /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work to macports
46:debug:extract euid/egid changed to: 63920313/504
47:debug:extract Privilege de-escalation not attempted as not running as root.
48:debug:patch patch phase started at Mon Apr  8 15:20:20 CDT 2013
49:debug:patch Executing org.macports.patch (py32-scipy)
50:notice:patch --->  Applying patches to py32-scipy
51:info:patch --->  Applying umfpack_extra_libs.patch
52:debug:patch Environment: CPATH='/opt/macports/include' CC_PRINT_OPTIONS_FILE='/opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/macports/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.6'
53:debug:patch Assembled command: 'cd "/opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0" && /usr/bin/patch -p0'
54:debug:patch Executing command line:  cd "/opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0" && /usr/bin/patch -p0 < '/opt/macports/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-scipy/files/umfpack_extra_libs.patch'
55:info:patch patching file site.cfg
56:debug:patch Executing proc-post-org.macports.patch-patch-0
57:debug:patch Executing reinplace: /usr/bin/sed s|@@MP_PREFIX@@|/opt/macports|g < /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/site.cfg >@ file10
58:debug:patch euid/egid changed to: 0/0
59:debug:patch chowned /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/site.cfg to macports
60:debug:patch euid/egid changed to: 63920313/504
61:debug:patch euid/egid changed to: 0/0
62:debug:patch setting attributes on /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/site.cfg
63:debug:patch euid/egid changed to: 63920313/504
64:debug:patch Executing reinplace: /usr/bin/sed s|vecLib|Accelerate|g < /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/scipy/lib/blas/fblaswrap_veclib_c.c.src >@ file10
65:debug:patch euid/egid changed to: 0/0
66:debug:patch chowned /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/scipy/lib/blas/fblaswrap_veclib_c.c.src to macports
67:debug:patch euid/egid changed to: 63920313/504
68:debug:patch euid/egid changed to: 0/0
69:debug:patch setting attributes on /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/scipy/lib/blas/fblaswrap_veclib_c.c.src
70:debug:patch euid/egid changed to: 63920313/504
71:debug:patch Executing reinplace: /usr/bin/sed s|vecLib|Accelerate|g < /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/scipy/linalg/src/fblaswrap_veclib_c.c >@ file10
72:debug:patch euid/egid changed to: 0/0
73:debug:patch chowned /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/scipy/linalg/src/fblaswrap_veclib_c.c to macports
74:debug:patch euid/egid changed to: 63920313/504
75:debug:patch euid/egid changed to: 0/0
76:debug:patch setting attributes on /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/scipy/linalg/src/fblaswrap_veclib_c.c
77:debug:patch euid/egid changed to: 63920313/504
78:debug:patch Executing reinplace: /usr/bin/sed s|vecLib|Accelerate|g < /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/scipy/sparse/linalg/eigen/arpack/ARPACK/FWRAPPERS/veclib_cabi_c.c >@ file10
79:debug:patch euid/egid changed to: 0/0
80:debug:patch chowned /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/scipy/sparse/linalg/eigen/arpack/ARPACK/FWRAPPERS/veclib_cabi_c.c to macports
81:debug:patch euid/egid changed to: 63920313/504
82:debug:patch euid/egid changed to: 0/0
83:debug:patch setting attributes on /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/scipy/sparse/linalg/eigen/arpack/ARPACK/FWRAPPERS/veclib_cabi_c.c
84:debug:patch euid/egid changed to: 63920313/504
85:debug:patch Executing reinplace: /usr/bin/sed s|vecLib|Accelerate|g < /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/scipy/sparse/linalg/isolve/iterative/FWRAPPERS/veclib_cabi_c.c >@ file10
86:debug:patch euid/egid changed to: 0/0
87:debug:patch chowned /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/scipy/sparse/linalg/isolve/iterative/FWRAPPERS/veclib_cabi_c.c to macports
88:debug:patch euid/egid changed to: 63920313/504
89:debug:patch euid/egid changed to: 0/0
90:debug:patch setting attributes on /opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0/scipy/sparse/linalg/isolve/iterative/FWRAPPERS/veclib_cabi_c.c
91:debug:patch euid/egid changed to: 63920313/504
92:debug:patch Privilege de-escalation not attempted as not running as root.
93:debug:configure configure phase started at Mon Apr  8 15:20:20 CDT 2013
94:notice:configure --->  Configuring py32-scipy
95:debug:configure Using compiler 'MacPorts gcc 4.4'
96:debug:configure Executing org.macports.configure (py32-scipy)
97:debug:configure Privilege de-escalation not attempted as not running as root.
98:debug:build build phase started at Mon Apr  8 15:20:20 CDT 2013
99:notice:build --->  Building py32-scipy
100:debug:build Executing proc-pre-org.macports.build-build-0
101:debug:build Executing org.macports.build (py32-scipy)
102:debug:build Environment: CPATH='/opt/macports/include' LIBRARY_PATH='/opt/macports/lib' MACOSX_DEPLOYMENT_TARGET='10.6' CCFLAGS='-I/opt/macports/include -L/opt/macports/lib' CXX='/opt/macports/bin/g++-mp-4.4' CC_PRINT_OPTIONS_FILE='/opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/.CC_PRINT_OPTIONS' LAPACK='/opt/macports/lib' OBJC='/opt/macports/bin/gcc-mp-4.4' F90='/opt/macports/bin/gfortran-mp-4.4' FC='/opt/macports/bin/gfortran-mp-4.4' BLAS='/opt/macports/lib' F77='/opt/macports/bin/gfortran-mp-4.4' ATLAS='/opt/macports/lib' CC_PRINT_OPTIONS='YES' CC='/opt/macports/bin/gcc-mp-4.4'
103:debug:build Assembled command: 'cd "/opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0" && /opt/macports/Library/Frameworks/Python.framework/Versions/3.2/bin/python3.2 setup.py --no-user-cfg config_fc --fcompiler gnu95 --f77exec /opt/macports/bin/gfortran-mp-4.4 --f90exec /opt/macports/bin/gfortran-mp-4.4 config --cc /opt/macports/bin/gcc-mp-4.4 --include-dirs /opt/macports/include --library-dirs /opt/macports/lib build'
104:debug:build Executing command line:  cd "/opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0" && /opt/macports/Library/Frameworks/Python.framework/Versions/3.2/bin/python3.2 setup.py --no-user-cfg config_fc --fcompiler gnu95 --f77exec /opt/macports/bin/gfortran-mp-4.4 --f90exec /opt/macports/bin/gfortran-mp-4.4 config --cc /opt/macports/bin/gcc-mp-4.4 --include-dirs /opt/macports/include --library-dirs /opt/macports/lib build
105:info:build Traceback (most recent call last):
106:info:build   File "setup.py", line 165, in <module>
107:info:build     setup_package()
108:info:build   File "setup.py", line 145, in setup_package
109:info:build     from numpy.distutils.core import setup
110:info:build   File "/opt/macports/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/__init__.py", line 137, in <module>
111:info:build     from . import add_newdocs
112:info:build   File "/opt/macports/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/add_newdocs.py", line 9, in <module>
113:info:build     from numpy.lib import add_newdoc
114:info:build   File "/opt/macports/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/lib/__init__.py", line 13, in <module>
115:info:build     from .polynomial import *
116:info:build   File "/opt/macports/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/lib/polynomial.py", line 17, in <module>
117:info:build     from numpy.linalg import eigvals, lstsq, inv
118:info:build   File "/opt/macports/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/linalg/__init__.py", line 48, in <module>
119:info:build     from .linalg import *
120:info:build   File "/opt/macports/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/linalg/linalg.py", line 23, in <module>
121:info:build     from numpy.linalg import lapack_lite
122:info:build ImportError: dlopen(/opt/macports/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/linalg/lapack_lite.so, 2): Symbol not found: _omp_get_num_threads
123:info:build   Referenced from: /opt/macports/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/linalg/lapack_lite.so
124:info:build   Expected in: flat namespace
125:info:build  in /opt/macports/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/linalg/lapack_lite.so
126:info:build Command failed:  cd "/opt/macports/var/macports/build/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/work/scipy-0.12.0" && /opt/macports/Library/Frameworks/Python.framework/Versions/3.2/bin/python3.2 setup.py --no-user-cfg config_fc --fcompiler gnu95 --f77exec /opt/macports/bin/gfortran-mp-4.4 --f90exec /opt/macports/bin/gfortran-mp-4.4 config --cc /opt/macports/bin/gcc-mp-4.4 --include-dirs /opt/macports/include --library-dirs /opt/macports/lib build
127:info:build Exit code: 1
128:error:build org.macports.build for port py32-scipy returned: command execution failed
129:debug:build Error code: CHILDSTATUS 48442 1
130:debug:build Backtrace: command execution failed
131    while executing
132"system -nice 0 $fullcmdstring"
133    ("eval" body line 1)
134    invoked from within
135"eval system $notty $nice \$fullcmdstring"
136    invoked from within
137"command_exec build"
138    (procedure "portbuild::build_main" line 8)
139    invoked from within
140"$procedure $targetname"
141:info:build Warning: targets not executed for py32-scipy: org.macports.install org.macports.build org.macports.destroot
142:notice:build Please see the log file for port py32-scipy for details:
143    /opt/macports/var/macports/logs/_opt_macports_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-scipy/py32-scipy/main.log