Ticket #49620: main.log

File main.log, 72.5 KB (added by summers@…, 9 years ago)

main.log

Line 
1version:1
2:msg:main --->  Computing dependencies for apbs:info:main .:debug:main apbs has no conflicts
3:debug:main Searching for dependency: cmake
4:debug:main Found Dependency: receipt exists for cmake
5:debug:main Searching for dependency: maloc
6:debug:main Found Dependency: receipt exists for maloc
7:debug:main Searching for dependency: readline
8:debug:main Found Dependency: receipt exists for readline
9:msg:main
10:debug:main Executing org.macports.main (apbs)
11:debug:main changing euid/egid - current euid: 0 - current egid: 0
12:debug:main egid changed to: 501
13:debug:main euid changed to: 502
14:debug:archivefetch archivefetch phase started at Sat Nov  7 06:06:28 EST 2015
15:msg:archivefetch --->  Fetching archive for apbs
16:warn:archivefetch Your DNS servers incorrectly claim to know the address of nonexistent hosts. This may cause checksum mismatches for some ports. See this page for more information: <https://trac.macports.org/wiki/MisbehavingServers>
17:debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0
18:debug:archivefetch Active variants check for archivefetch-type install considers depends_lib depends_run: maloc readline
19:debug:archivefetch Executing org.macports.archivefetch (apbs)
20:debug:archivefetch euid/egid changed to: 0/0
21:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
22:debug:archivefetch euid/egid changed to: 502/501
23:info:archivefetch --->  apbs-1.4.1_0.darwin_15.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
24:msg:archivefetch --->  Attempting to fetch apbs-1.4.1_0.darwin_15.x86_64.tbz2 from http://packages.macports.org/apbs
25:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found
26:msg:archivefetch --->  Attempting to fetch apbs-1.4.1_0.darwin_15.x86_64.tbz2 from http://lil.fr.packages.macports.org/apbs
27:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found
28:msg:archivefetch --->  Attempting to fetch apbs-1.4.1_0.darwin_15.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/apbs
29:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found
30:debug:archivefetch Privilege de-escalation not attempted as not running as root.
31:debug:fetch fetch phase started at Sat Nov  7 06:06:29 EST 2015
32:notice:fetch --->  Fetching distfiles for apbs
33:debug:fetch Executing proc-pre-org.macports.fetch-fetch-0
34:debug:fetch Executing proc-pre-org.macports.fetch-fetch-1
35:debug:fetch Executing proc-pre-org.macports.fetch-fetch-2
36:debug:fetch Executing org.macports.fetch (apbs)
37:debug:fetch Privilege de-escalation not attempted as not running as root.
38:debug:checksum checksum phase started at Sat Nov  7 06:06:29 EST 2015
39:notice:checksum --->  Verifying checksums for apbs
40:debug:checksum Executing org.macports.checksum (apbs)
41:info:checksum --->  Checksumming apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz
42:debug:checksum Calculated (rmd160) is 5c4d583e12deb3fbc2b5a8031882311cbfd22c7e
43:debug:checksum Correct (rmd160) checksum for apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz
44:debug:checksum Calculated (sha256) is f98ce6a51d8f813e1b4fa626c054ddbf7a985403ca30f890733cb1abf2bd6e05
45:debug:checksum Correct (sha256) checksum for apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz
46:debug:checksum Privilege de-escalation not attempted as not running as root.
47:debug:extract extract phase started at Sat Nov  7 06:06:29 EST 2015
48:notice:extract --->  Extracting apbs
49:debug:extract Executing org.macports.extract (apbs)
50:info:extract --->  Extracting apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz
51:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/apbs/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz'
52:debug:extract Environment:
53CC_PRINT_OPTIONS='YES'
54CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/.CC_PRINT_OPTIONS'
55CPATH='/opt/local/include'
56LIBRARY_PATH='/opt/local/lib'
57MACOSX_DEPLOYMENT_TARGET='10.11'
58:debug:extract Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/apbs/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz' | /usr/bin/tar -xf -'
59:debug:extract Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/apbs/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz' | /usr/bin/tar -xf -
60:debug:extract euid/egid changed to: 0/0
61:debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work to macports
62:debug:extract euid/egid changed to: 502/501
63:debug:extract Executing proc-post-org.macports.extract-extract-0
64:debug:extract Privilege de-escalation not attempted as not running as root.
65:debug:patch patch phase started at Sat Nov  7 06:06:30 EST 2015
66:debug:patch Executing org.macports.patch (apbs)
67:debug:patch Privilege de-escalation not attempted as not running as root.
68:debug:configure configure phase started at Sat Nov  7 06:06:30 EST 2015
69:notice:configure --->  Configuring apbs
70:debug:configure Using compiler 'Xcode Clang'
71:debug:configure Executing proc-pre-org.macports.configure-configure-0
72:debug:configure Executing proc-pre-org.macports.configure-configure-1
73:debug:configure Executing proc-pre-org.macports.configure-configure-2
74:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: maloc readline cmake
75:debug:configure Executing org.macports.configure (apbs)
76:debug:configure Environment:
77CC='/usr/bin/clang'
78CC_PRINT_OPTIONS='YES'
79CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/.CC_PRINT_OPTIONS'
80CFLAGS='-pipe -Os -arch x86_64'
81CPATH='/opt/local/include'
82CPPFLAGS='-I/opt/local/include'
83CXX='/usr/bin/clang++'
84CXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++'
85F77FLAGS='-m64'
86F90FLAGS='-pipe -Os -m64'
87FCFLAGS='-pipe -Os -m64'
88FFLAGS='-pipe -Os'
89INSTALL='/usr/bin/install -c'
90LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64'
91LIBRARY_PATH='/opt/local/lib'
92MACOSX_DEPLOYMENT_TARGET='10.11'
93OBJC='/usr/bin/clang'
94OBJCFLAGS='-pipe -Os -arch x86_64'
95OBJCXX='/usr/bin/clang++'
96OBJCXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++'
97:debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DENABLE_OPENMP:BOOL=OFF -DENABLE_BEM=OFF -DENABLE_MPI:BOOL=OFF -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.11" -DCMAKE_OSX_SYSROOT="/" ./apbs'
98:debug:configure Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DENABLE_OPENMP:BOOL=OFF -DENABLE_BEM=OFF -DENABLE_MPI:BOOL=OFF -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.11" -DCMAKE_OSX_SYSROOT="/" ./apbs
99:info:configure -- The C compiler identification is AppleClang 7.0.0.7000176
100:info:configure -- The CXX compiler identification is AppleClang 7.0.0.7000176
101:info:configure -- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang
102:info:configure -- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -- works
103:info:configure -- Detecting C compiler ABI info
104:info:configure -- Detecting C compiler ABI info - done
105:info:configure -- Detecting C compile features
106:info:configure -- Detecting C compile features - done
107:info:configure -- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++
108:info:configure -- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -- works
109:info:configure -- Detecting CXX compiler ABI info
110:info:configure -- Detecting CXX compiler ABI info - done
111:info:configure -- Detecting CXX compile features
112:info:configure -- Detecting CXX compile features - done
113:info:configure -- Setting project paths
114:info:configure -- Setting lookup paths for headers and libraries
115:info:configure -- Computing machine epsilon values
116:info:configure -- Floating point epsilon is 2.220446e-16
117:info:configure -- Double precision epsilon is 2.220446e-16
118:info:configure -- Looking for time
119:info:configure -- Looking for time - found
120:info:configure -- Looking for rand
121:info:configure -- Looking for rand - found
122:info:configure -- Looking for srand
123:info:configure -- Looking for srand - found
124:info:configure CMake Warning at CMakeLists.txt:232 (message):
125:info:configure   Did not find fetk
126:info:configure
127:info:configure
128:info:configure -- External maloc library was found: /opt/local/lib/libmaloc.dylib
129:info:configure -- Looking for include file maloc/maloc.h
130:info:configure -- Looking for include file maloc/maloc.h - found
131:info:configure -- External maloc headers found
132:info:configure -- Inline functions enabled
133:info:configure libs: -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow-lmaloc-lm
134:info:configure -- Adding apbs_generic
135:info:configure -- With source files nosh.c;mgparm.c;femparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c
136:info:configure -- With external header files nosh.h;mgparm.h;femparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h
137:info:configure -- With internal header files
138:info:configure -- With library dependencies -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm
139:info:configure -- Added apbs_generic
140:info:configure -- Adding apbs_pmgc
141:info:configure -- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c
142:info:configure -- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h
143:info:configure -- With internal header files
144:info:configure -- With library dependencies -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm
145:info:configure -- Added apbs_pmgc
146:info:configure -- Adding apbs_mg
147:info:configure -- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c
148:info:configure -- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h
149:info:configure -- With internal header files
150:info:configure -- With library dependencies -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm;apbs_generic;apbs_pmgc
151:info:configure -- Added apbs_mg
152:info:configure -- Adding apbs_geoflow
153:info:configure -- With source files cpbconcz2.cpp;modules.cpp;pbsolvercz.cpp;solvationsub.cpp;subfunction.cpp;surfconcz.cpp
154:info:configure -- With external header files cpbconcz2.h
155:info:configure -- With internal header files
156:info:configure -- With library dependencies -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm
157:info:configure -- Added apbs_geoflow
158:info:configure --
159:info:configure -- 
160:info:configure -- -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm apbs_generic;apbs_pmgc;apbs_mg;apbs_geoflow
161:info:configure -- 
162:info:configure -- -std=c99
163:info:configure -- Supplemental tools enabled
164:info:configure -- Building mesh
165:info:configure -- libraries: apbs_generic;apbs_mg;apbs_pmgc
166:info:configure -- Building manip
167:info:configure -- libraries: apbs_generic;apbs_mg;apbs_pmgc
168:info:configure -- Configuring done
169:info:configure -- Generating done
170:info:configure -- Build files have been written to: /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063
171:debug:configure Privilege de-escalation not attempted as not running as root.
172:debug:build build phase started at Sat Nov  7 06:06:33 EST 2015
173:notice:build --->  Building apbs
174:debug:build Executing org.macports.build (apbs)
175:debug:build Environment:
176CC_PRINT_OPTIONS='YES'
177CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/.CC_PRINT_OPTIONS'
178CPATH='/opt/local/include'
179LIBRARY_PATH='/opt/local/lib'
180MACOSX_DEPLOYMENT_TARGET='10.11'
181:debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063" && /usr/bin/make -j8 -w all VERBOSE=ON'
182:debug:build Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063" && /usr/bin/make -j8 -w all VERBOSE=ON
183:info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
184:info:build /opt/local/bin/cmake -H/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs -B/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 --check-build-system CMakeFiles/Makefile.cmake 0
185:info:build /opt/local/bin/cmake -E cmake_progress_start /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/CMakeFiles /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/CMakeFiles/progress.marks
186:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/Makefile2 all
187:info:build make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
188:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/geoflow/CMakeFiles/apbs_geoflow.dir/build.make src/geoflow/CMakeFiles/apbs_geoflow.dir/depend
189:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend
190:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend
191:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
192:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/apbs_geoflow.dir/DependInfo.cmake --color=
193:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
194:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color=
195:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
196:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color=
197:info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/apbs_generic.dir/depend.internal".
198:info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/apbs_generic.dir/depend.internal".
199:info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/apbs_geoflow.dir/DependInfo.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/apbs_geoflow.dir/depend.internal".
200:info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/apbs_geoflow.dir/depend.internal".
201:info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal".
202:info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal".
203:info:build Scanning dependencies of target apbs_geoflow
204:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
205:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/geoflow/CMakeFiles/apbs_geoflow.dir/build.make src/geoflow/CMakeFiles/apbs_geoflow.dir/build
206:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
207:info:build Scanning dependencies of target apbs_generic
208:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
209:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build
210:info:build Scanning dependencies of target apbs_pmgc
211:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
212:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build
213:info:build [  1%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/cpbconcz2.cpp.o
214:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++    -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -std=c++0x -o CMakeFiles/apbs_geoflow.dir/cpbconcz2.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/cpbconcz2.cpp
215:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
216:info:build [  2%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/modules.cpp.o
217:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++    -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -std=c++0x -o CMakeFiles/apbs_geoflow.dir/modules.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/modules.cpp
218:info:build [  3%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/pbsolvercz.cpp.o
219:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++    -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -std=c++0x -o CMakeFiles/apbs_geoflow.dir/pbsolvercz.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/pbsolvercz.cpp
220:info:build [  4%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/subfunction.cpp.o
221:info:build [  5%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/solvationsub.cpp.o
222:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++    -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -std=c++0x -o CMakeFiles/apbs_geoflow.dir/subfunction.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/subfunction.cpp
223:info:build [  6%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/surfconcz.cpp.o
224:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++    -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -std=c++0x -o CMakeFiles/apbs_geoflow.dir/surfconcz.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/surfconcz.cpp
225:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++    -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -std=c++0x -o CMakeFiles/apbs_geoflow.dir/solvationsub.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/solvationsub.cpp
226:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
227:info:build [  8%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o
228:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/nosh.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/nosh.c
229:info:build [  9%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o
230:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/buildAd.c
231:info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/nosh.c:432:9: warning: implicit declaration of function 'BEMparm_copy' is invalid in C99 [-Wimplicit-function-declaration]
232:info:build         BEMparm_copy(thee->bemparm, source->bemparm);
233:info:build         ^
234:info:build [ 10%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o
235:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/buildBd.c
236:info:build 1 warning generated.
237:info:build [ 11%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o
238:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/mgparm.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/mgparm.c
239:info:build [ 12%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o
240:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/buildGd.c
241:info:build In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/modules.cpp:55:
242:info:build In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/modules.h:60:
243:info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/Mat.h:60:10: fatal error: 'Eigen/Core' file not found
244:info:build #include <Eigen/Core>
245:info:build          ^
246:info:build 1 error generated.
247:info:build make[2]: *** [src/geoflow/CMakeFiles/apbs_geoflow.dir/modules.cpp.o] Error 1
248:info:build make[2]: *** Waiting for unfinished jobs....
249:info:build In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/subfunction.cpp:55:
250:info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/Mat.h:60:10: fatal error: 'Eigen/Core' file not found
251:info:build #include <Eigen/Core>
252:info:build          ^
253:info:build 1 error generated.
254:info:build make[2]: *** [src/geoflow/CMakeFiles/apbs_geoflow.dir/subfunction.cpp.o] Error 1
255:info:build [ 13%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o
256:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/femparm.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/femparm.c
257:info:build [ 15%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o
258:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/buildPd.c
259:info:build [ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o
260:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/pbeparm.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/pbeparm.c
261:info:build In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/solvationsub.cpp:58:
262:info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/Mat.h:60:10: fatal error: 'Eigen/Core' file not found
263:info:build #include <Eigen/Core>
264:info:build          ^
265:info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/pbsolvercz.cpp:59:10: fatal error: 'Eigen/Sparse' file not found
266:info:build #include <Eigen/Sparse>
267:info:build          ^
268:info:build 1 error generated.
269:info:build 1 error generated.
270:info:build make[2]: *** [src/geoflow/CMakeFiles/apbs_geoflow.dir/solvationsub.cpp.o] Error 1
271:info:build make[2]: *** [src/geoflow/CMakeFiles/apbs_geoflow.dir/pbsolvercz.cpp.o] Error 1
272:info:build [ 17%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o
273:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/cgd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/cgd.c
274:info:build [ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o
275:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/bemparm.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/bemparm.c
276:info:build [ 19%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o
277:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/gsd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/gsd.c
278:info:build [ 20%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o
279:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/matvecd.c
280:info:build [ 22%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o
281:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/geoflowparm.c
282:info:build [ 23%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o
283:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/mgcsd.c
284:info:build [ 24%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o
285:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/mgdrvd.c
286:info:build [ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o
287:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/apolparm.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/apolparm.c
288:info:build [ 26%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o
289:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/mgsubd.c
290:info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/apolparm.c:632:1: warning: control may reach end of non-void function [-Wreturn-type]
291:info:build }
292:info:build ^
293:info:build 1 warning generated.
294:info:build [ 27%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o
295:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/vacc.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/vacc.c
296:info:build [ 29%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o
297:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/mikpckd.c
298:info:build [ 30%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o
299:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/valist.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/valist.c
300:info:build [ 31%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o
301:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/mlinpckd.c
302:info:build In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/cpbconcz2.cpp:65:
303:info:build In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/modules.h:60:
304:info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/Mat.h:60:10: fatal error: 'Eigen/Core' file not found
305:info:build #include <Eigen/Core>
306:info:build          ^
307:info:build [ 32%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o
308:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/vatom.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/vatom.c
309:info:build 1 error generated.
310:info:build make[2]: *** [src/geoflow/CMakeFiles/apbs_geoflow.dir/cpbconcz2.cpp.o] Error 1
311:info:build [ 33%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o
312:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/vpbe.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/vpbe.c
313:info:build [ 34%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o
314:info:build [ 36%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o
315:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/vcap.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/vcap.c
316:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/mypdec.c
317:info:build [ 37%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o
318:info:build [ 38%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o
319:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/newtond.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/newtond.c
320:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/vclist.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/vclist.c
321:info:build In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/surfconcz.cpp:59:
322:info:build In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/modules.h:60:
323:info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/Mat.h:60:10: fatal error: 'Eigen/Core' file not found
324:info:build #include <Eigen/Core>
325:info:build          ^
326:info:build [ 39%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o
327:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/vstring.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/vstring.c
328:info:build 1 error generated.
329:info:build make[2]: *** [src/geoflow/CMakeFiles/apbs_geoflow.dir/surfconcz.cpp.o] Error 1
330:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
331:info:build make[1]: *** [src/geoflow/CMakeFiles/apbs_geoflow.dir/all] Error 2
332:info:build make[1]: *** Waiting for unfinished jobs....
333:info:build [ 40%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o
334:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/newdrvd.c
335:info:build [ 41%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o
336:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/vparam.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/vparam.c
337:info:build [ 43%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o
338:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/powerd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/powerd.c
339:info:build [ 44%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o
340:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_generic.dir/vgreen.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/vgreen.c
341:info:build [ 45%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o
342:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/smoothd.c
343:info:build [ 46%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o
344:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang   -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.11 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src    -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o   -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/mgfasd.c
345:info:build [ 47%] Linking C static library ../../apbs/lib/libapbs_generic.a
346:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /opt/local/bin/cmake -P CMakeFiles/apbs_generic.dir/cmake_clean_target.cmake
347:info:build [ 48%] Linking C static library ../../apbs/lib/libapbs_pmgc.a
348:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /opt/local/bin/cmake -P CMakeFiles/apbs_pmgc.dir/cmake_clean_target.cmake
349:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /opt/local/bin/cmake -E cmake_link_script CMakeFiles/apbs_generic.dir/link.txt --verbose=ON
350:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /opt/local/bin/cmake -E cmake_link_script CMakeFiles/apbs_pmgc.dir/link.txt --verbose=ON
351:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ar cq ../../apbs/lib/libapbs_generic.a  CMakeFiles/apbs_generic.dir/nosh.c.o CMakeFiles/apbs_generic.dir/mgparm.c.o CMakeFiles/apbs_generic.dir/femparm.c.o CMakeFiles/apbs_generic.dir/pbeparm.c.o CMakeFiles/apbs_generic.dir/bemparm.c.o CMakeFiles/apbs_generic.dir/geoflowparm.c.o CMakeFiles/apbs_generic.dir/apolparm.c.o CMakeFiles/apbs_generic.dir/vacc.c.o CMakeFiles/apbs_generic.dir/valist.c.o CMakeFiles/apbs_generic.dir/vatom.c.o CMakeFiles/apbs_generic.dir/vpbe.c.o CMakeFiles/apbs_generic.dir/vcap.c.o CMakeFiles/apbs_generic.dir/vclist.c.o CMakeFiles/apbs_generic.dir/vstring.c.o CMakeFiles/apbs_generic.dir/vparam.c.o CMakeFiles/apbs_generic.dir/vgreen.c.o
352:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ar cq ../../apbs/lib/libapbs_pmgc.a  CMakeFiles/apbs_pmgc.dir/buildAd.c.o CMakeFiles/apbs_pmgc.dir/buildBd.c.o CMakeFiles/apbs_pmgc.dir/buildGd.c.o CMakeFiles/apbs_pmgc.dir/buildPd.c.o CMakeFiles/apbs_pmgc.dir/cgd.c.o CMakeFiles/apbs_pmgc.dir/gsd.c.o CMakeFiles/apbs_pmgc.dir/matvecd.c.o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o CMakeFiles/apbs_pmgc.dir/mypdec.c.o CMakeFiles/apbs_pmgc.dir/newtond.c.o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o CMakeFiles/apbs_pmgc.dir/powerd.c.o CMakeFiles/apbs_pmgc.dir/smoothd.c.o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o
353:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib ../../apbs/lib/libapbs_generic.a
354:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib ../../apbs/lib/libapbs_pmgc.a
355:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
356:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
357:info:build [ 48%] Built target apbs_generic
358:info:build [ 48%] Built target apbs_pmgc
359:info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
360:info:build make: *** [all] Error 2
361:info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063'
362:info:build Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063" && /usr/bin/make -j8 -w all VERBOSE=ON
363:info:build Exit code: 2
364:error:build org.macports.build for port apbs returned: command execution failed
365:debug:build Error code: CHILDSTATUS 27304 2
366:debug:build Backtrace: command execution failed
367    while executing
368"system -nice 0 $fullcmdstring"
369    ("eval" body line 1)
370    invoked from within
371"eval system $notty $nice \$fullcmdstring"
372    invoked from within
373"command_exec build"
374    (procedure "portbuild::build_main" line 8)
375    invoked from within
376"portbuild::build_main org.macports.build"
377    ("eval" body line 1)
378    invoked from within
379"eval $procedure $targetname"
380:info:build Warning: targets not executed for apbs: org.macports.install org.macports.build org.macports.destroot
381:notice:build Please see the log file for port apbs for details:
382    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/main.log