Opened 14 years ago
Last modified 14 years ago
#25327 closed defect
gcc-mp-4.3: Internal error compiling R packages — at Initial Version
| Reported by: | raramayo (Rodolfo Aramayo) | Owned by: | macports-tickets@… |
|---|---|---|---|
| Priority: | Normal | Milestone: | |
| Component: | ports | Version: | 1.9.1 |
| Keywords: | Cc: | ||
| Port: | gcc43 R |
Description
When trying to upgrade my Bioconductor 'R' packages using MacPorts I run into the following:
- installing *source* package ‘IRanges’ ...
libs /opt/local/bin/gcc-mp-4.3 -std=gnu99 -I/opt/local/lib/R/include -I/opt/local/include -fPIC -O2 -m32 -c AEbufs.c -o AEbufs.o dyld: Library not loaded: /opt/local/lib/libmpfr.1.dylib
Referenced from: /opt/local/libexec/gcc/i386-apple-darwin9/4.3.5/cc1 Reason: image not found
gcc-mp-4.3: Internal error: Trace/BPT trap (program cc1) Please submit a full bug report. See <http://gcc.gnu.org/bugs.html> for instructions. make: * [AEbufs.o] Error 1 ERROR: compilation failed for package ‘IRanges’ ... ... ...
- installing *source* package ‘limma’ ...
libs /opt/local/bin/gcc-mp-4.3 -std=gnu99 -I/opt/local/lib/R/include -I/opt/local/include -fPIC -O2 -m32 -c normexp.c -o normexp.o dyld: Library not loaded: /opt/local/lib/libmpfr.1.dylib
Referenced from: /opt/local/libexec/gcc/i386-apple-darwin9/4.3.5/cc1 Reason: image not found
gcc-mp-4.3: Internal error: Trace/BPT trap (program cc1) Please submit a full bug report. See <http://gcc.gnu.org/bugs.html> for instructions. make: * [normexp.o] Error 1 ERROR: compilation failed for package ‘limma’ ... ... ...
- installing *source* package ‘RSQLite’ ...
checking for gcc... /opt/local/bin/gcc-mp-4.3 -std=gnu99 checking for C compiler default output file name... rm: a.out.dSYM: is a directory
configure: error: C compiler cannot create executables See `config.log' for more details. ERROR: configuration failed for package ‘RSQLite’ ... ... ...
- installing *source* package ‘Biostrings’ ...
libs /opt/local/bin/gcc-mp-4.3 -std=gnu99 -I/opt/local/lib/R/include -I/opt/local/include -I"/Users/raramayo/R/i386-apple-darwin9.8.0-library/2.11/IRanges/include" -fPIC -O2 -m32 -c BAB_class.c -o BAB_class.o dyld: Library not loaded: /opt/local/lib/libmpfr.1.dylib
Referenced from: /opt/local/libexec/gcc/i386-apple-darwin9/4.3.5/cc1 Reason: image not found
gcc-mp-4.3: Internal error: Trace/BPT trap (program cc1) Please submit a full bug report. See <http://gcc.gnu.org/bugs.html> for instructions. make: * [BAB_class.o] Error 1 ERROR: compilation failed for package ‘Biostrings’