Opened 10 years ago
Last modified 10 years ago
#45530 closed defect
Pymol @1.7.1.1on Yosemite — at Version 5
Reported by: | sean.connell@… | Owned by: | howarth@… |
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Priority: | Normal | Milestone: | |
Component: | ports | Version: | 2.3.2 |
Keywords: | Cc: | radaroutthere@… | |
Port: | pymol |
Description (last modified by ryandesign (Ryan Carsten Schmidt))
Hello I am have problems running pymol @1.7.1.1 under Mac OS X 10.10. I was first using a version that worked under OS X 10.9 but after the upgrade it failed with this error:
Detected OpenGL version 2.0 or greater. Shaders available. Detected GLSL version 1.20. OpenGL graphics engine: GL_VENDOR: NVIDIA Corporation GL_RENDERER: NVIDIA GeForce GT 750M OpenGL Engine GL_VERSION: 2.1 NVIDIA-10.0.43 310.41.05f01 Mac OS X 10.10000 or later required ! Abort trap: 6
Then following the instructions on mac port I tried to remove and reinstall pymol with:
sudo port uninstall pymol sudo port install pymol
and now the installation files with:
Error: org.macports.destroot for port pymol returned: error copying "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports" to "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/bin/pymol": file already exists
Change History (5)
comment:1 Changed 10 years ago by sean.connell@…
Cc: | sean.connell@… added |
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comment:2 Changed 10 years ago by radaroutthere@…
Hi. I think I know the cause of the abort trap problem.
Two seconds of searching seems to indicate that PyMOL uses Tkinter. A bug has recently been filed in Tk for Yosemite - http://core.tcl.tk/tk/info/1d37c3e16616a0e6283ef390272f0cf483b74b5f - which produces the same error.
While I feel the pain of this problem, I'm not sure how it can be solved. If it's a problem in Tk itself, then it may be outside the scope of MacPorts. Hoping that someone else can provide a suggestion or hope of a solution.
comment:4 Changed 10 years ago by radaroutthere@…
Turns out that the Tk bug was filed in relation to MacPorts ticket #45444
comment:5 Changed 10 years ago by ryandesign (Ryan Carsten Schmidt)
Cc: | sean.connell@… removed |
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Description: | modified (diff) |
Owner: | changed from macports-tickets@… to howarth@… |
Port: | @1.7.1.1 removed |
The reason why you get an error copying is presumably that you did not run "sudo port clean pymol" before trying to install it.
Cc Me!