Opened 10 years ago

Closed 10 years ago

#47244 closed update (fixed)

pymol-1.7.5.0 update

Reported by: howarth.at.macports@… Owned by: macports-tickets@…
Priority: Normal Milestone:
Component: ports Version: 2.3.3
Keywords: Cc: kurthindenburg (Kurt Hindenburg)
Port: pymol

Description

The attached Portfile.diff and revised pymol-use-glkit.diff which...

1) updates to 1.7.5.0 at r4112 from pymol svn 2) enhances the pymol-use-glkit.diff to eliminate usages of the deprecated gluErrorString call.

Attachments (2)

pymol-use-glkit.diff (3.2 KB) - added by howarth.at.macports@… 10 years ago.
replacement patch for pymol-use-glkit.diff
Portfile.diff (998 bytes) - added by howarth.at.macports@… 10 years ago.
Portfile diff for the pymol 1.7.5.0 at r4113

Download all attachments as: .zip

Change History (9)

Changed 10 years ago by howarth.at.macports@…

Attachment: pymol-use-glkit.diff added

replacement patch for pymol-use-glkit.diff

comment:1 Changed 10 years ago by howarth.at.macports@…

The existing pymol-clang.diff patch is deprecated and can be removed.

Changed 10 years ago by howarth.at.macports@…

Attachment: Portfile.diff added

Portfile diff for the pymol 1.7.5.0 at r4113

comment:2 Changed 10 years ago by howarth.at.macports@…

Updated Portfile diff to r4113 which resolves the long delays in opening the tk interface window on ATI cards.

comment:3 Changed 10 years ago by kurthindenburg (Kurt Hindenburg)

Cc: khindenburg@… added

Cc Me!

comment:4 Changed 10 years ago by kurthindenburg (Kurt Hindenburg)

it builds OK here on 10.10 but the destroot step fails;

DEBUG: Executing command line:  cd "/opt/local/var/macports/build/_Volumes_Projects_OtherSoftware_macports-trunk_dports_science_pymol/pymol/work/pymol" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg install --prefix=/opt/local/Library/Frameworks/Python.framework/Versions/2.7 --root=/opt/local/var/macports/build/_Volumes_Projects_OtherSoftware_macports-trunk_dports_science_pymol/pymol/work/destroot
fatal: Not a git repository (or any of the parent directories): .git
svn: E155007: '/opt/local/var/macports/build/_Volumes_Projects_OtherSoftware_macports-trunk_dports_science_pymol/pymol/work/pymol' is not a working copy
Traceback (most recent call last):
  File "setup.py", line 273, in <module>
    glut = posix_find_lib(['glut', 'freeglut'], lib_dirs)
  File "setup.py", line 79, in posix_find_lib
    raise IOError('could not find any of ' + str(names))
IOError: could not find any of ['glut', 'freeglut']

comment:5 Changed 10 years ago by howarth.at.macports@…

I can't reproduce that problem here on darwin14. Have you tried reinstalling the MacPorts freeglut package? The setup.py is patched to contain...

try:

prefix_path = os.environPREFIX_PATH?.split(os.pathsep)

except KeyError:

prefix_path = ["/opt/local", "/usr", "/usr/X11"]

which should find the MacPorts glut in preference to the X11 copy.

comment:6 Changed 10 years ago by kurthindenburg (Kurt Hindenburg)

my fault - forgot I had https://trac.macports.org/wiki/UsingTheRightCompiler#testing installed - it works after I removed it - I'll commit shortly

comment:7 Changed 10 years ago by kurthindenburg (Kurt Hindenburg)

Resolution: fixed
Status: newclosed

done r134517

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