Opened 6 months ago

Closed 5 months ago

#69858 closed defect (fixed)

R-ggtree @3.11.0: object 'rect_to_poly' not found

Reported by: ryandesign (Ryan Carsten Schmidt) Owned by: barracuda156
Priority: Normal Milestone:
Component: ports Version: 2.9.3
Keywords: Cc: barracuda156
Port: R-ggtree

Description

https://build.macports.org/builders/ports-14_arm64-builder/builds/27334/steps/install-port/logs/stdio

* installing *source* package ‘ggtree’ ...
** using staged installation
** R
** inst
** tests
** byte-compile and prepare package for lazy loading
Error in get(x, envir = ns, inherits = FALSE) : 
  object 'rect_to_poly' not found
Error: unable to load R code in package ‘ggtree’
Execution halted
ERROR: lazy loading failed for package ‘ggtree’
* removing ‘/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_R_R-ggtree/R-ggtree/work/build/ggtree’
Command failed:  cd "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_R_R-ggtree/R-ggtree/work/ggtree-33a07af48961d893c2a5dcbdc221881899d0456f" && /opt/local/bin/R CMD INSTALL . --library=/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_R_R-ggtree/R-ggtree/work/build --install-tests 
Exit code: 1

Change History (3)

comment:1 in reply to:  description Changed 5 months ago by barracuda156

Replying to ryandesign:

This is perhaps incompatibility issue with some other package which was updated. R-ggtree is at 3.11.2 now, I will update it and see if the problem is fixed.

comment:2 Changed 5 months ago by barracuda156

I will switch all Bioconductor packages to release versions, and this should be solved then.

comment:3 Changed 5 months ago by barracuda156

Owner: set to barracuda156
Resolution: fixed
Status: newclosed

In 459fffe4a3c71d3475292b97432efc245550695e/macports-ports (master):

R: update bioconductor stuff to 3.19 release

Closes: #69858

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